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A novel MCF-10A line allowing conditional oncogene expression in 3D culture

30.08.2011
Herr R, Wöhrle FU, Danke C, Berens C, Brummer T (2011). Cell Communication and Signaling 2011, 9:17

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ErbB2-associated changes in the lysosomal proteome

06.07.2011
Nylandsted J, Becker AC, Bunkenborg J, Andersen JS, Dengjel J, Jäättelä M (2011). Proteomics 11 (14): 2830-2838

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Comparison of ERLIC-TiO2, HILIC-TiO2 and SCX-TiO2 for global phosphoproteomics approaches

06.07.2011
Zarei M, Sprenger A, Metzger F, Gretzmeier C, Dengjel J. J Proteome Res. 2011

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Strong negative feedback from Erk to Raf confers robustness to MAPK signalling

08.06.2011
R. Fritsche-Guenther, F. Witzel, A. Sieber, R. Herr, N. Schmidt, S. Braun, T. Brummer, C. Sers, N. Blüthgen (2011). Molecular Systems Biology 7: 489

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Proteomic techniques and activity-based probes for the system-wide study of proteolysis

09.03.2011
auf dem Keller U, Schilling O. (2010). Proteomic techniques and activity-based probes for the system-wide study of proteolysis. Biochimie. 92(11):1705-14. Review.

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Biological role of matrix metalloproteinases: a critical balance

09.03.2011
Löffek S, Schilling O, Franzke CW (2011). Biological role of matrix metalloproteinases: a critical balance. Eur Respir J. [Epub ahead of print]

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Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry

09.03.2011
Schilling O, Huesgen PF, Barré O, Auf dem Keller U, Overall CM (2011). Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry. Nat Protoc. 6(1):111-20

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Proteome-wide analysis of protein carboxy termini: C terminomics

09.03.2011
Schilling O, Barré O, Huesgen PF, Overall CM (2010). Proteome-wide analysis of protein carboxy termini: C terminomics. Nat Methods 7(7):508-11.

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Linkage disequilibrium under genetic hitchhiking in finite populations

08.03.2011
Pfaffelhuber P, Lehnert A, Stephan W (2008) Linkage disequilibrium under genetic hitchhiking in finite populations, Genetics, 179:527-537

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The pattern of genetic hitchhiking under recurrent mutation

08.03.2011
Hermisson J, Pfaffelhuber P (2008) The pattern of genetic hitchhiking under recurrent mutation, Elec J Probab, 13: 2069-2106

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Convergence in distribution of random metric measure spaces: (Lambda-coalescent measure trees)

08.03.2011
Greven A, Pfaffelhuber P, Winter A (2009) Convergence in distribution of random metric measure spaces: (Lambda-coalescent measure trees), Prob Theo Rel Fields, 145: 285-322

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Estimating Mutation Distances from Unaligned Genomes

08.03.2011
Haubold B, Pfaffelhuber P, Domazet-Loso M, Wiehe T (2009) Estimating Mutation Distances from Unaligned Genomes, J Comp Biol, 16: 1487-1500

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The impact of sampling schemes on the site frequency spectrum in non-equilibrium subdivided populations

08.03.2011
Staedler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P (2009) The impact of sampling schemes on the site frequency spectrum in non-equilibrium subdivided populations. Genetics, 182: 205-216

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mlRho - A program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

08.03.2011
Haubold B, Pfaffelhuber P, Lynch M (2010) mlRho - A program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes, Mol. Ecol., 19 Supp 1: 274-284

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How often does the ratchet click? Facts, heuristics, asymptotics

08.03.2011
Etheridge A, Pfaffelhuber P, Wakolbinger A (2009) How often does the ratchet click? Facts, heuristics, asymptotics. In Trends in Stochastic Analysis (J. Blath, P. Mörters, M. Scheutzow eds.), LMS 353, Cambridge University Press, Lecture Notes Series 353

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Asymptotics of a Brownian ratchet for Protein Translocation

08.03.2011
Depperschmidt A, Pfaffelhuber P (2010) Asymptotics of a Brownian ratchet for Protein Translocation, Stoch Proc Appl, 120: 901-925

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The diversity of a distributed genome in bacterial populations

08.03.2011
Baumdicker F, Hess WR, Pfaffelhuber P (2010) The diversity of a distributed genome in bacterial populations, Ann. Appl Probab, 20:1567-1606

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The Aldous-Shields model revisited with application to cellular ageing

08.03.2011
Best K, Pfaffelhuber P (2010) The Aldous-Shields model revisited with application to cellular ageing, Elec Comm Probab, 15, 475-488

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Primary cilia regulate mTORC1 activity and cell size through Lkb1

08.03.2011
Boehlke C, Kotsis F, Patel V, Braeg S, Voelker H, Bredt S, Beyer T, Janusch H, Hamann C, Gödel M, Müller K, Herbst M, Hornung M, Doerken M, Köttgen M, Nitschke R, Igarashi P, Walz G, Kuehn EW (2010). Primary cilia regulate mTORC1 activity and cell size through Lkb1. Nat Cell Biol. 12(11):1115-22.

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Differential role of Rab proteins in ciliary trafficking: Rab23 regulates smoothened levels

08.03.2011
Boehlke C, Bashkurov M, Buescher A, Krick T, John AK, Nitschke R, Walz G, Kuehn EW (2010). Differential role of Rab proteins in ciliary trafficking: Rab23 regulates smoothened levels. J Cell Sci. 123(Pt 9):1460-7.

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